PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00069.1.g00100.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 369aa    MW: 40643.9 Da    PI: 4.4733
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00069.1.g00100.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.2e-19115164255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+G+r+++ +g+W+AeIrdp++     r++lg++ ++eeAa+a++a +++++g
  Zpz_sc00069.1.g00100.1.sm.mkhc 115 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTYNSPEEAARAYDAEARRIRG 164
                                     69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.36E-31115174No hitNo description
PROSITE profilePS5103223.709115172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-31115173IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-21115173IPR016177DNA-binding domain
SMARTSM003803.7E-36115178IPR001471AP2/ERF domain
PRINTSPR003672.6E-10116127IPR001471AP2/ERF domain
PfamPF008477.0E-12116164IPR001471AP2/ERF domain
PRINTSPR003672.6E-10138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MCGGAILADL TAHPEPRRRL TEGALWPEKK KPKRGGGRRG FVEEDDADFE ADFEEFEEDS  60
GESDLELGQG EDDDVVEIKP FAAKRNFSGD GLSTMTTASF DGPAARSAKR KRKNQYRGIR  120
QRPWGKWAAE IRDPRKGVRV WLGTYNSPEE AARAYDAEAR RIRGKKAKVN FPDTPNVAQK  180
RRANPAAVRA PKSSFEQKPT VIAAVNNPIN TNGSFYPSAD YNPNKQVVQL DNMTFSPSIN  240
TPAPMEDPIM NLHSDQGSNS FGCSDLGWEN DTKTPDITSI TPISTIAEGD ESEFVNSNSN  300
SSLVPPIMVN NSVDLTDGLT DLESYMRFLL DGGASESIDS LLNLDGSQDV VSNMDLWSFD  360
DMPITGDFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-19114176467ATERF1
3gcc_A5e-19114176467ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148691.10.0uncharacterized protein LOC100282307
SwissprotQ6K7E61e-169ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLB4G1H00.0B4G1H0_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G018398_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.34e-36related to AP2 2